diff --git a/src/libsysprof/binfile.c b/src/libsysprof/binfile.c
index 81f3e497..0f90f9da 100644
--- a/src/libsysprof/binfile.c
+++ b/src/libsysprof/binfile.c
@@ -356,14 +356,18 @@ get_vdso_bytes (size_t *length)
 bin_file_t *
 bin_file_new (const char *filename)
 {
+    const gchar *real_filename = filename;
     ElfParser *elf = NULL;
     bin_file_t *bf;
 
+    if (g_str_has_prefix (filename, "/var/run/host"))
+      real_filename = filename + strlen ("/var/run/host");
+
     bf = g_new0 (bin_file_t, 1);
 
     bf->inode_check = FALSE;
     bf->filename = g_strdup (filename);
-    bf->undefined_name = g_strdup_printf ("In file %s", filename);
+    bf->undefined_name = g_strdup_printf ("In file %s", real_filename);
     bf->ref_count = 1;
     bf->elf_files = NULL;
 
diff --git a/src/libsysprof/sysprof-elf-symbol-resolver.c b/src/libsysprof/sysprof-elf-symbol-resolver.c
index de1a4b7f..d7dbff04 100644
--- a/src/libsysprof/sysprof-elf-symbol-resolver.c
+++ b/src/libsysprof/sysprof-elf-symbol-resolver.c
@@ -126,6 +126,21 @@ sysprof_elf_symbol_resolver_load (SysprofSymbolResolver *resolver,
     }
 }
 
+static gboolean
+is_flatpak (void)
+{
+  static gsize did_init = FALSE;
+  static gboolean ret;
+
+  if (g_once_init_enter (&did_init))
+    {
+      ret = g_file_test ("/.flatpak-info", G_FILE_TEST_EXISTS);
+      g_once_init_leave (&did_init, TRUE);
+    }
+
+  return ret;
+}
+
 static bin_file_t *
 sysprof_elf_symbol_resolver_get_bin_file (SysprofElfSymbolResolver *self,
                                           const gchar              *filename)
@@ -151,7 +166,16 @@ sysprof_elf_symbol_resolver_get_bin_file (SysprofElfSymbolResolver *self,
       if (g_str_has_prefix (filename, "/newroot/"))
         alternate += strlen ("/newroot");
 
-      bin_file = bin_file_new (alternate);
+      if (is_flatpak () && g_str_has_prefix (filename, "/usr/"))
+        {
+          g_autofree gchar *path = g_build_filename ("/var/run/host", alternate, NULL);
+          bin_file = bin_file_new (path);
+        }
+      else
+        {
+          bin_file = bin_file_new (alternate);
+        }
+
       g_hash_table_insert (self->bin_files, g_strdup (filename), bin_file);
     }